diff --git a/input/bios.bin b/input/bios.bin
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diff --git a/input/bios.elf b/input/bios.elf
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diff --git a/input/mem_1.init b/input/mem_1.init
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--- a/input/mem_1.init
+++ /dev/null
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diff --git a/input/top.bin b/input/top.bin
deleted file mode 100644
index beb5f06..0000000
Binary files a/input/top.bin and /dev/null differ
diff --git a/Makefile b/sw/Makefile
similarity index 100%
rename from Makefile
rename to sw/Makefile
diff --git a/include/console.h b/sw/include/console.h
similarity index 100%
rename from include/console.h
rename to sw/include/console.h
diff --git a/include/crc.h b/sw/include/crc.h
similarity index 100%
rename from include/crc.h
rename to sw/include/crc.h
diff --git a/include/csr-defs.h b/sw/include/csr-defs.h
similarity index 100%
rename from include/csr-defs.h
rename to sw/include/csr-defs.h
diff --git a/include/generated/csr.h b/sw/include/generated/csr.h
similarity index 100%
rename from include/generated/csr.h
rename to sw/include/generated/csr.h
diff --git a/include/generated/mem.h b/sw/include/generated/mem.h
similarity index 100%
rename from include/generated/mem.h
rename to sw/include/generated/mem.h
diff --git a/include/grainuum.h b/sw/include/grainuum.h
similarity index 100%
rename from include/grainuum.h
rename to sw/include/grainuum.h
diff --git a/include/hw/common.h b/sw/include/hw/common.h
similarity index 100%
rename from include/hw/common.h
rename to sw/include/hw/common.h
diff --git a/include/hw/flags.h b/sw/include/hw/flags.h
similarity index 100%
rename from include/hw/flags.h
rename to sw/include/hw/flags.h
diff --git a/include/irq.h b/sw/include/irq.h
similarity index 100%
rename from include/irq.h
rename to sw/include/irq.h
diff --git a/include/printf.h b/sw/include/printf.h
similarity index 100%
rename from include/printf.h
rename to sw/include/printf.h
diff --git a/include/spiflash.h b/sw/include/spiflash.h
similarity index 100%
rename from include/spiflash.h
rename to sw/include/spiflash.h
diff --git a/include/system.h b/sw/include/system.h
similarity index 100%
rename from include/system.h
rename to sw/include/system.h
diff --git a/include/time.h b/sw/include/time.h
similarity index 100%
rename from include/time.h
rename to sw/include/time.h
diff --git a/include/uart.h b/sw/include/uart.h
similarity index 100%
rename from include/uart.h
rename to sw/include/uart.h
diff --git a/include/usb.h b/sw/include/usb.h
similarity index 100%
rename from include/usb.h
rename to sw/include/usb.h
diff --git a/ld/linker.ld b/sw/ld/linker.ld
similarity index 100%
rename from ld/linker.ld
rename to sw/ld/linker.ld
diff --git a/ld/output_format.ld b/sw/ld/output_format.ld
similarity index 100%
rename from ld/output_format.ld
rename to sw/ld/output_format.ld
diff --git a/ld/regions.ld b/sw/ld/regions.ld
similarity index 100%
rename from ld/regions.ld
rename to sw/ld/regions.ld
diff --git a/src/grainuum-phy.c b/sw/src/grainuum-phy.c
similarity index 100%
rename from src/grainuum-phy.c
rename to sw/src/grainuum-phy.c
diff --git a/src/grainuum-state.c b/sw/src/grainuum-state.c
similarity index 100%
rename from src/grainuum-state.c
rename to sw/src/grainuum-state.c
diff --git a/src/main.c b/sw/src/main.c
similarity index 100%
rename from src/main.c
rename to sw/src/main.c
diff --git a/src/usb-epfifo.c b/sw/src/usb-epfifo.c
similarity index 100%
rename from src/usb-epfifo.c
rename to sw/src/usb-epfifo.c
diff --git a/src/usb-rawfifo.c b/sw/src/usb-rawfifo.c
similarity index 100%
rename from src/usb-rawfifo.c
rename to sw/src/usb-rawfifo.c
diff --git a/third_party/libbase/crc16.c b/sw/third_party/libbase/crc16.c
similarity index 100%
rename from third_party/libbase/crc16.c
rename to sw/third_party/libbase/crc16.c
diff --git a/third_party/libbase/crc32.c b/sw/third_party/libbase/crc32.c
similarity index 100%
rename from third_party/libbase/crc32.c
rename to sw/third_party/libbase/crc32.c
diff --git a/third_party/libbase/crt0-vexriscv.S b/sw/third_party/libbase/crt0-vexriscv.S
similarity index 100%
rename from third_party/libbase/crt0-vexriscv.S
rename to sw/third_party/libbase/crt0-vexriscv.S
diff --git a/third_party/libbase/libc.c b/sw/third_party/libbase/libc.c
similarity index 100%
rename from third_party/libbase/libc.c
rename to sw/third_party/libbase/libc.c
diff --git a/third_party/libbase/qsort.c b/sw/third_party/libbase/qsort.c
similarity index 100%
rename from third_party/libbase/qsort.c
rename to sw/third_party/libbase/qsort.c
diff --git a/third_party/libbase/time.c b/sw/third_party/libbase/time.c
similarity index 100%
rename from third_party/libbase/time.c
rename to sw/third_party/libbase/time.c
diff --git a/third_party/libbase/uart.c b/sw/third_party/libbase/uart.c
similarity index 100%
rename from third_party/libbase/uart.c
rename to sw/third_party/libbase/uart.c
diff --git a/third_party/printf.c b/sw/third_party/printf.c
similarity index 100%
rename from third_party/printf.c
rename to sw/third_party/printf.c